PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918819.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 346aa    MW: 38355.2 Da    PI: 8.8155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918819.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.4e-07193215123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_010918819.1 193 HYCQVCGKGFKREANLRMHMRAH 215
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.38E-7163217No hitNo description
SMARTSM003557.6E-4193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.778193220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-7193219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SMARTSM0035535247280IPR015880Zinc finger, C2H2-like
SMARTSM0035530285307IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDDMLSPSHS LLYNLSVLRD KVQQLETIAA AALSPNPIQQ ESIAMEISSA GNIVQQIITA  60
ASSTAYILQQ ISLDAAVMRH DLPQHHQTKV LYQQGSTEAM NHVFHNNLEG GRSSSIFSFE  120
VQYHNANQST NANDHGINNV GSGGNGANTR DHQNMGMPRE VEKCKESSQT FSLNGCDGII  180
EMDAAALLAK YSHYCQVCGK GFKREANLRM HMRAHGDEYK TAAALSNPMK NSGGSMAQKD  240
GGSAQRYSCP QEGCRWNKNH ASFQPLKSMA CMKNHYKRSH CPKMYVCNRC NHKKFSVLSD  300
LRTHEKHCGD RRWRCSCGTN FSRKDKLMGH VALFSGHTPV TSFLGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918819.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLA0A2H3ZDW10.0A0A2H3ZDW1_PHODC; LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2
STRINGXP_008812337.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-94C2H2 family protein