PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918822.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 219aa    MW: 24262.9 Da    PI: 6.9145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918822.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-055375123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_010918822.1 53 YTCSFCKREFRSAQALGGHMNVH 75
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-65079No hitNo description
PROSITE profilePS5015711.245380IPR007087Zinc finger, C2H2
PfamPF139121.4E-65376IPR007087Zinc finger, C2H2
SMARTSM003550.00385375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEKGGRSSRD NSDNHNSSSN KKVREPWSCT QVGKGDTVCS DLIGGFLWPP RSYTCSFCKR  60
EFRSAQALGG HMNVHRRDRA RLRQSPPWDP PLSNHTPNPN PSGTLIPNLN VSPPSNASDT  120
RLSPRTYRFP SLLSPLNCFS SSSSSTSLAE LFSSRGGDLK GMEAVKALFG VEELRDLMKE  180
GTADEFRREG EVVRLDLEIG TRGDSEEDDL DLELRLGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-144875229superman protein
2l1o_A4e-144875229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918822.11e-160transcriptional regulator SUPERMAN-like
TrEMBLA0A2H3Y6W11e-115A0A2H3Y6W1_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008794310.11e-115(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-24zinc finger protein 11