PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918855.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 265aa    MW: 28115.5 Da    PI: 8.2369
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918855.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.6e-19179213135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + +Tp+WR gp+g+ktLCnaCG++y++ +l
  XP_010918855.1 179 CRHCEAEETPQWRAGPEGPKTLCNACGVRYKSGRL 213
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.939173209IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-17173223IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-14175236No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14177211IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.73E-13178235No hitNo description
PfamPF003206.4E-17179213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVEPLEEPPE GCLAADDLLL LDFPSDIDLN PPPHRRNRNP PLPAAAGGLQ DQSLLDILDS  60
TDIPAVDGLP GLAAEGGGGG EEEEELEWLS NKDAFPGLET SFEIPTHSRS SSGGGTGSSS  120
SAATAAEGAR PSPVSVLAVA APSRVPVRPR SKGRRRRRRV LAGLSPAVAA TEAKERRRCR  180
HCEAEETPQW RAGPEGPKTL CNACGVRYKS GRLVPEYRPA ASPTFSAAIH SNSHRRIMEM  240
RRHNSARGRR TGRPPATPLV AGSAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149158RSKGRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918855.10.0GATA transcription factor 1
RefseqXP_029119842.10.0GATA transcription factor 1
TrEMBLA0A2H3Z5H51e-120A0A2H3Z5H5_PHODC; GATA transcription factor 1-like
STRINGXP_008808450.11e-121(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-30GATA transcription factor 1