PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919012.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 573aa    MW: 63956.8 Da    PI: 4.4442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919012.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-5091401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrFhPtdeelv++yLk k++g+ +++  vi+evd++k+ePw+Lp k  +++++ ew+fFs+rd+ky++g+r+nrat++gyWkatg+d++++
  XP_010919012.1   9 LPLGFRFHPTDEELVNYYLKGKINGRINSEVVVIPEVDVCKSEPWELPgKsVIRSDDPEWFFFSPRDRKYPNGHRSNRATDAGYWKATGRDRTIK 103
                     699***********************9888788***************6446677888************************************* PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++  +++ +g+kktLvf+ grapkg++t W+mheyr 
  XP_010919012.1 104 TRppGSTIIGMKKTLVFHLGRAPKGVRTYWIMHEYRT 140
                     *9999999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-593161IPR003441NAC domain
PROSITE profilePS5100558.459161IPR003441NAC domain
PfamPF023651.1E-2610139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MVVLPLESLP LGFRFHPTDE ELVNYYLKGK INGRINSEVV VIPEVDVCKS EPWELPGKSV  60
IRSDDPEWFF FSPRDRKYPN GHRSNRATDA GYWKATGRDR TIKTRPPGST IIGMKKTLVF  120
HLGRAPKGVR TYWIMHEYRT TESEFDSGEQ GSFVLCRLFK KPEEKSPSSN VGAIDGNVDE  180
MESSFLSPGE TPQGTDTLEE FAALLNQELL QPAMQENLQP SLNISDTQST STNNPLRPED  240
TGDHATTYPL RPEENHCNNN GASAVGDHEA GPEGSQMFQD NYVEQDSVTE FLDGVINNQE  300
EDFPEVTDTQ KDSAPRDVPD RLICKLQVSS RDSVSGKEGG TGGDVGTIPV TMQEGQDMDA  360
YGHHYQSFSQ SSGSSQMNNS NNYHETRTDE INLLPETENA LWIQSGTINF KTRQELPDMN  420
NLMAWQGLVP RNFRLQNEID KGSMLTCREL SSKKDDNEVN SVIPEAKECA EHQTAEDTEI  480
SGSLFLDDVE GISDHDDATS IEAMTAFSEI SHESKSVLRQ RTRGTHENDD KLKGLPLQLD  540
TPRIVCVSIT RANVILLAIL LLICVVISWY LSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-45816119168NAC domain-containing protein 19
3swm_B3e-45816119168NAC domain-containing protein 19
3swm_C3e-45816119168NAC domain-containing protein 19
3swm_D3e-45816119168NAC domain-containing protein 19
3swp_A3e-45816119168NAC domain-containing protein 19
3swp_B3e-45816119168NAC domain-containing protein 19
3swp_C3e-45816119168NAC domain-containing protein 19
3swp_D3e-45816119168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919012.10.0protein NTM1-like 9 isoform X2
TrEMBLA0A2H3Z5370.0A0A2H3Z537_PHODC; protein NTM1-like 9
STRINGXP_008808290.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.18e-76NAC transcription factor-like 9