PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919283.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 236aa MW: 27039 Da PI: 6.9661

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919283.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.5e-15	10	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l XP_010919283.1 10 RGNIGQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 55 677789**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.56E-14	1	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-24	1	60	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.447	5	59	IPR017930	Myb domain
SMART	SM00717	3.1E-14	9	57	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-14	10	55	IPR001005	SANT/Myb domain
CDD	cd00167	2.69E-10	15	55	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MNYLRPDIKR GNIGQDEEDL IIRLHSLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKLK 60 RQGIEVREGT YKGTSKRARP ISQKRSDSVN KSNNHNSKNQ QDKGKKKNKG EDTAEITGTK 120 VYIPKPTRFT PTLRNCNLIE NGGVSEVPKT ESAASQEEKG DTSMEAQTND LEINWYDIKE 180 GGFFFEEDDP NHVLAFDFPS KDRLLEGLYQ EYYELLNSEG NQAQLNSYPD QSLVLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-13	2	59	51	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119917.1	1e-175	transcription repressor MYB6 isoform X2
Refseq	XP_029119918.1	1e-175	myb-related protein P isoform X3
TrEMBL	B3TLL1	1e-172	B3TLL1_ELAGV; MYB transcription factor MYB92
STRING	XP_008775013.1	1e-125	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-33	myb domain protein 5

Publications ? help Back to Top
Low ET, et al. Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: identifying genes associated with callogenesis and embryogenesis. BMC Plant Biol., 2008. 8: p. 62 [PMID:18507865]