PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919316.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 301aa    MW: 33618.8 Da    PI: 9.2226
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919316.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.6e-33682081128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                     lp+G++F+Ptd+el+ e+L+ k++ ++      ++++  +i+   +i++++P++Lp  v+ +    +fF++ +k+y+tg+rk+r+++      + 
  XP_010919316.1  68 LPAGVKFDPTDQELL-EHLEGKARPDSqklhplIDEFIpTIEGEnGICYTHPEKLP-GVSRDGLIRHFFHRPSKAYTTGTRKRRKVHtdahggET 160
                     799************.99****998885565443332233665557**********.555555677******************74444555577 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++vl+ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_010919316.1 161 RWHKTGKTRPVLA-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 208
                     8************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3860227IPR003441NAC domain
PROSITE profilePS5100533.92868227IPR003441NAC domain
PfamPF023653.9E-1569208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRDKERKMTW CNSCDDDRVI DRSSASSAAL ISKKSYANVI KTCPSCGHRI QYEEQVAAAA  60
AIQDLPGLPA GVKFDPTDQE LLEHLEGKAR PDSQKLHPLI DEFIPTIEGE NGICYTHPEK  120
LPGVSRDGLI RHFFHRPSKA YTTGTRKRRK VHTDAHGGET RWHKTGKTRP VLAGGKLKGY  180
KKILVLYTNY GKQRKPEKTN WVMHQYHLGS DEEEKDGELV VSKVFYQTQP RQCGSVAKDS  240
TVQGNSRGLN GDDHPILKDA SIVDYYNSSL ITYNQGGHNR ANSPHLIPNF AVHAGGTSYL  300
P
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919316.10.0NAC domain-containing protein 73
SwissprotO494591e-125NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2H3XX350.0A0A2H3XX35_PHODC; NAC domain-containing protein 73-like
STRINGXP_008789978.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]