PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919351.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 23382.3 Da PI: 5.2629

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919351.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.3e-20	12	65	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++f++eq++ Le+ F+++ ++ +++ +LAk+lgL+ rqV +WFqN+Ra++k XP_010919351.1 12 KKRRFSEEQIKSLESIFQSQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 65 5679*************************************************9 PP
2	HD-ZIP_I/II	121.7	3.6e-39	12	103	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrr+s+eq+k+LE+ F+++ kLep++K +la+eLglqprqva+WFqn+RAR+k+kqlE++y+aLk+ +d+l ++ e+L+ke++ L +++++ XP_010919351.1 12 KKRRFSEEQIKSLESIFQSQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYAALKADHDTLLSNVESLKKEKQILIKQMQK 103 9**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.1E-18	6	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.912	7	67	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	10	71	IPR001356	Homeobox domain
CDD	cd00086	1.84E-15	12	68	No hit	No description
Pfam	PF00046	2.2E-17	12	65	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-19	13	74	IPR009057	Homeodomain-like
PRINTS	PR00031	6.7E-6	38	47	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	42	65	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.7E-6	47	63	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.2E-14	67	108	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDPFLDKSRS DKKRRFSEEQ IKSLESIFQS QAKLEPRKKL QLAKELGLQP RQVAIWFQNK 60 RARWKSKQLE REYAALKADH DTLLSNVESL KKEKQILIKQ MQKLTELLKK PTEESSNDDD 120 SDGGDRTRID DARPCFLVRS GDEEKKPSFF NQEEPDCLYV GEPEGGFLTS VGKPCDFNCN 180 SGSPEQCCAT ASEWWEFWPL TE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919351.1	1e-146	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	2e-48	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	2e-48	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A2H3Y0L7	1e-122	A0A2H3Y0L7_PHODC; homeobox-leucine zipper protein HOX6-like
STRING	XP_008791625.1	1e-123	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-41	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]