PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919375.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family DBB
Protein Properties Length: 295aa    MW: 31387.3 Da    PI: 6.5653
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919375.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06446541
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C+ +  + ++ fC  ++  lC+ C   +H+       H++ +
  XP_010919375.1  4 QCDVCAAEAASVFCCADEAALCDACDRCIHSAnklagkHRRLS 46
                    7*****************************6678888888765 PP
2zf-B_box292.2e-095992235
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                    +++ C+ ++ek+ +lfC++++  lC+dC + +H 
  XP_010919375.1 59 SPPLCDICQEKRGILFCREDRAILCRDCDVPIHT 92
                    5789**************************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.968147IPR000315B-box-type zinc finger
SMARTSM003363.9E-9147IPR000315B-box-type zinc finger
CDDcd000213.60E-5344No hitNo description
SMARTSM003364.6E-1458105IPR000315B-box-type zinc finger
PROSITE profilePS501199.76958105IPR000315B-box-type zinc finger
PfamPF006431.5E-760101IPR000315B-box-type zinc finger
CDDcd000215.24E-763105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR CIHSANKLAG KHRRLSLLHP SPSSSSIQSP  60
PLCDICQEKR GILFCREDRA ILCRDCDVPI HTASDLTMNH SRFLLTGVRL SSAPLPSAPP  120
PEAGVVDDKN KDNDKHVKIK NHGNKGHENL VVVAAKEEAA CSSSTTTTAP AAAAAAAAAA  180
DGSNSSSISE YLIKMLPGWH VEDFLTDEAA AAADADAFSQ VNEELSKGSS GLGGVGEGPP  240
IWVPQAKYPV EECQAGHLFQ GFVGSKASRQ RWGDAYLRVP QMHGNKRCRT TVWYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919376.10.0B-box zinc finger protein 20
TrEMBLA0A2H3Y0J11e-126A0A2H3Y0J1_PHODC; B-box zinc finger protein 20-like
STRINGXP_008791645.11e-127(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.18e-26DBB family protein