PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919380.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 421aa    MW: 44838.6 Da    PI: 6.1815
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919380.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.8e-19341375135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  XP_010919380.1 341 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 375
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-16335389IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-14337398No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14339373IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.292339371IPR000679Zinc finger, GATA-type
CDDcd002022.77E-14340397No hitNo description
PfamPF003201.1E-16341375IPR000679Zinc finger, GATA-type
PROSITE patternPS003440341366IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MLHQTQIPSS SPLFTFNPST TTTTSSSSFI PLPVYPLQSP LQFHSSQVEK DRRMEGALKS  60
SLRSEPLAAS GQPDHQGLLA DDPAWAAVER GNLLLGEGFS VDELLDLGEF AEPEKETEEK  120
PDAGAESAKA EENSNSLSSC SSSVLSFELP PPSEICLPLS PLPLMVQDVE ELEWVSLIID  180
DSLSEFPPSC SGIAPPFPPP PPPKPQAESP PENRPASSRP PTVCALSTEA LVPVKAKRSK  240
RSRSATAGWS LSGPPSFADS STTTITSSSS SCSSSSSSLE SCLIYEPTAC GGGDYNLFLD  300
NIPPPPEPPS KKHKLKKGGW KPKPPQAAFT AVAAGGGERR CSHCGVQKTP QWRAGPLGAK  360
TLCNACGVRF KSGRLLPEYR PACSPTFISN VHSNSHRKVL EMRRKKEAEL LASSALPVPS  420
F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919380.10.0GATA transcription factor 5
TrEMBLA0A2H3Y0P00.0A0A2H3Y0P0_PHODC; GATA transcription factor 5
STRINGXP_008791648.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-40GATA transcription factor 5