PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919575.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 181aa MW: 19932.3 Da PI: 7.7709

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919575.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.6e-07	3	31	22	55
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P++ K +Ka++L +++eY+k+Lq XP_010919575.1 3 ALQKLVPNS-----SKTEKASMLDEVIEYLKQLQ 31 699999997.....7******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.553	1	30	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-10	1	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.21E-8	1	35	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.2E-10	1	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MKALQKLVPN SSKTEKASML DEVIEYLKQL QAQVQMMSRM STMMMPMTMP QLQMSMMAHM 60 AQMAQMAHMG MGMGMGMGMM DLNSLNQLSH ASLPPLVHPS AFLPLSTTCW DGSGDKMQQS 120 GGTVHPDLFS AFLAYQTAQQ QQPPPPVAQP REPPVGMDAY SWMAALHQQS RQQPPPGNPK 180 P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919575.2	1e-125	transcription factor UNE10
TrEMBL	B9RD58	5e-45	B9RD58_RICCO; DNA binding protein, putative
STRING	XP_002511647.1	8e-46	(Ricinus communis)
STRING	XP_008796095.1	3e-48	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7474	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-17	bHLH family protein