PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919586.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 332aa    MW: 34817.5 Da    PI: 7.6635
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919586.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-18231265135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010919586.1 231 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 265
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-16225275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13229263IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385229261IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-14229289No hitNo description
CDDcd002023.54E-14230277No hitNo description
PfamPF003209.8E-16231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MATEWQIGMG AAASAAAAAA APLTGSASPA YFYGLPSTDT LHIDDLLDFS NHDLFPSAEA  60
HLLPTPQQSS AITTATRPYA GNADSSSIFQ THHHPSSSFP DDIYIPSEEA AELEWLSKFV  120
DDSFSDIPYP TAVTGVVAPA GDAHLRAEPS VPGRGARSKR SRAPTGFAAG AAWSSIPPPS  180
QTSPSSSSSS SSSDFPPSKP KASAGSSNNN NNGRGKKGGG EIGVEGGVRR CTHCASEKTP  240
QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT QHSNSHRKVM ELRRQKELLL  300
LRHDNPSSAA STSAPAAPGP RPELLFHDYG VC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919586.10.0GATA transcription factor 2
SwissprotO497413e-68GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A2H3YRP01e-156A0A2H3YRP0_PHODC; GATA transcription factor
STRINGXP_008802812.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.14e-53GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]