PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919591.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 367aa    MW: 39225.8 Da    PI: 9.0735
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919591.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.5e-41118194177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq+egC adl++ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q
  XP_010919591.1 118 RCQAEGCGADLTHAKHYHRRHKVCEFHSKASIVITAGLSQRFCQQCSRFHVLAEFDQGKRSCRKRLADHNRRRRKSQ 194
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-31114180IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086116193IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-38117194IPR004333Transcription factor, SBP-box
PfamPF031102.9E-30119192IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMLEYEWGNP AAAMLLFGDQ ETGQDTGQDR PVFDHYGCHG GLGGVDFFPN PQPLTAAALF  60
SPSSSSPSSC HQRYGLAMPP APARIGLNLG VRTYFSSASP EEEMAVGRVC RRRTRTARCQ  120
AEGCGADLTH AKHYHRRHKV CEFHSKASIV ITAGLSQRFC QQCSRFHVLA EFDQGKRSCR  180
KRLADHNRRR RKSQDLTAAT ISITQANNST TNTSSGVTKN SVANPERILF NTRSSPNNNK  240
SSSSSSNNNC SNLSATTAAM AFAACKPETE YSSVTHASSP KAAPPSLPLP PPATLPRMAL  300
GLGCGTGGIM TVPAAATGLS GSSSTGTSPP SVAFLAHLGE FRGHENRFPS WDEAEDGSSI  360
RGLYQSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-301191921184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919591.10.0squamosa promoter-binding-like protein 8
TrEMBLA0A2H3YRN51e-172A0A2H3YRN5_PHODC; squamosa promoter-binding-like protein 8
STRINGXP_008802805.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1946357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-46squamosa promoter binding protein-like 8