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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010919788.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 257aa MW: 28470.3 Da PI: 11.0299 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 28.4 | 4.3e-09 | 2 | 45 | 46 | 87 |
trihelix 46 spkqCkekwenlnkrykkikegekkr..tsessstcpyfdqlea 87
+++qC++k e+l+kry+++++++ + +++ +st++yf++++a
XP_010919788.1 2 TSVQCRHKVEKLRKRYRAERQRSVAHdpSAPPTSTWVYFRKMDA 45
789********************99955567789********85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 3.1E-8 | 1 | 46 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 257 aa Download sequence Send to blast |
KTSVQCRHKV EKLRKRYRAE RQRSVAHDPS APPTSTWVYF RKMDAMEHGS APSAAVAAAF 60 RPSSSPATPR SRSDEDGEEE EEEADDGHGS AGGGGNTRSL HRLMANGGGI GGGLRFIIPK 120 AVRSKITTGS RVEERAPAPS VGGVMNPSPT TRFFKGSGGA RPAMEEMRRR LEKSRRRRER 180 DSSDAVGEMV SALRTLGDGF MRMEQMKMEM AREMDKVRRE MELKRTEMIL DSQRRIVDAF 240 VKGFFGGKKR AKVSPEA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010919788.3 | 1e-150 | uncharacterized protein LOC105043787 | ||||
| TrEMBL | A0A2H3Y889 | 1e-115 | A0A2H3Y889_PHODC; trihelix transcription factor ASIL2-like | ||||
| STRING | XP_008794930.1 | 1e-116 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5689 | 32 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G44730.1 | 3e-15 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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