PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919877.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LSD

Protein Properties

Length: 143aa MW: 15052.7 Da PI: 6.9974

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919877.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.9	7.9e-14	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V XP_010919877.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	29.7	1e-09	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ lL+ GA sV+C++C+t+ XP_010919877.1 66 CGGCHMLLMHMHGAYSVQCSCCHTI 90 ***********************97 PP
3	zf-LSD1	41.7	1.8e-13	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+ lL+YP GA+sV+Ca+C++V XP_010919877.1 104 CANCHMLLMYPDGARSVKCAVCNFV 128 9**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	5.1E-5	22	126	No hit	No description
TIGRFAMs	TIGR01053	5.5E-13	24	54	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.1E-11	27	51	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.4E-10	64	92	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.2E-9	66	90	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.8E-11	101	130	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.6E-12	104	128	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MPVPLIPYAA PPVPFTPPNG SQSQIVCSGC RNLLLYPLGA TSVCCAVCNA VTVVPSPGTE 60 MARLVCGGCH MLLMHMHGAY SVQCSCCHTI NLALEANQVA HVNCANCHML LMYPDGARSV 120 KCAVCNFVTS IVDSPSSEQK LDS

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919877.1	1e-100	protein LSD1 isoform X1
Swissprot	Q0J7V9	6e-69	LSD1_ORYSJ; Protein LSD1
TrEMBL	W1PNK2	2e-78	W1PNK2_AMBTC; Uncharacterized protein
STRING	ERN09291	4e-79	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-54	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]