PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919878.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LSD

Protein Properties

Length: 139aa MW: 14904.4 Da PI: 8.1036

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919878.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43	7.6e-14	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V XP_010919878.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	29.8	9.9e-10	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ lL+ GA sV+C++C+t+ XP_010919878.1 66 CGGCHMLLMHMHGAYSVQCSCCHTI 90 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.2E-13	24	54	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.9E-11	27	51	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.2E-10	64	92	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.8E-9	66	90	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MPVPLIPYAA PPVPFTPPNG SQSQIVCSGC RNLLLYPLGA TSVCCAVCNA VTVVPSPGTE 60 MARLVCGGCH MLLMHMHGAY SVQCSCCHTI NLALEGVMKS HYPSNSQYFS TPLGSHTSSI 120 VQQLLLMKRD QNYQLRAHG

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919878.1	2e-97	protein LSD1 isoform X2
Swissprot	Q0J7V9	6e-42	LSD1_ORYSJ; Protein LSD1
TrEMBL	A0A1U8AU49	6e-51	A0A1U8AU49_NELNU; protein LSD1
STRING	XP_010269986.1	1e-51	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-30	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]