PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919899.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 222aa    MW: 24933.3 Da    PI: 4.7173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919899.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.71.1e-14831965121
            GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     L + + ++  g+le+a +  + l+  a+p+gd+ qR  a+++ AL + + +  +s++ +     +  e  s+++ aa +++++++P++k   +ta
  XP_010919899.1  83 LSDTVAVIVVGNLEAAVTNRSVLKWAANPHGDSKQRHMAMMVTALCSWIEQpPSSGVLH----HSFIELYSAKHPAAIQILYDLTPCFKHILFTA 173
                     5566667777899999999999999*************************933333333....2222334899999******************* PP

            GRAS  99 NqaIleavegeervHiiDfdisq 121
                     N aIl+a+    r+H +Df i +
  XP_010919899.1 174 NLAILKATRDYLRIHFLDFAILK 196
                     *******************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.41553222IPR005202Transcription factor GRAS
PfamPF035143.7E-1283196IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MMWNRLFEEL ERRLLDDEDE DEDEDEDEDE VSASGCLAVT TNEWTTLAVH NTLSPSLTTT  60
SSSTTSSSTS CFPLSSTPSC QMLSDTVAVI VVGNLEAAVT NRSVLKWAAN PHGDSKQRHM  120
AMMVTALCSW IEQPPSSGVL HHSFIELYSA KHPAAIQILY DLTPCFKHIL FTANLAILKA  180
TRDYLRIHFL DFAILKATRD CPHDELLHWV KSLRPWVMVL VE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934000.12e-51scarecrow-like protein 8
TrEMBLA0A2H3Z1S72e-44A0A2H3Z1S7_PHODC; scarecrow-like protein 8
STRINGXP_008807223.13e-45(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-10SCARECROW-like 1