PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919927.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 186aa    MW: 20664.2 Da    PI: 6.2522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919927.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-056183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010919927.1 61 YTCTFCRREFRSAQALGGHMNVH 83
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-65987No hitNo description
Gene3DG3DSA:3.30.160.608.7E-45986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00666183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1576188IPR007087Zinc finger, C2H2
PfamPF139121.3E-56184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASELSLLSL NQLQKLAQQQ QQYFNPRNWP GLRLAEADDD SWKVRAFAES ATGMTWPLRS  60
YTCTFCRREF RSAQALGGHM NVHRRDRARL LQSPQGSHPS SPTTPSPPIV FPPPVPEFVS  120
GGRCYCLLYP IPDAATIIFA PTRDSPSTLL YISPYPGNGS GGVDKDEGNN GDDVDKELDL  180
ELRLGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-125683229superman protein
2l1o_A7e-125683229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919927.11e-137zinc finger protein KNUCKLES-like
TrEMBLA0A2H3YBV88e-67A0A2H3YBV8_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008796324.11e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-24C2H2 family protein