PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920037.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family BBR-BPC
Protein Properties Length: 231aa    MW: 25516.3 Da    PI: 10.5004
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920037.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind252.92e-772323193301
       GAGA_bind  93 salpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                     ++  ++ + ls+tk+++s++   ++ + ++ + +++  e  +++  +e ++  +++++++ k+++++ +k+ ++k++kk+++++ k++ +++  +
  XP_010920037.1  23 FSWIPQRSFLSQTKNMNSTHAtpVNSEMMDVQGMPVAAEGAMQNGVLEAKPLRVRKQHRSTKKNNHTAAKVLRQKEPKKQPSVPAKRKGSST--S 115
                     555556678889999998887433334455555667777777777777777788888888888999999**********9999988777776..6 PP

       GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
                       k+ekk++d+ ++g  +D s++PvPvCsCtG+++qCY+WG+GGWqS+CCt++iS yPLP+s+ r+gaR+agrKmS ga++klL +LaaeG+dls
  XP_010920037.1 116 MGKREKKTQDIIVDGTMVDFSNVPVPVCSCTGVPHQCYRWGAGGWQSSCCTMSISEYPLPMSPSRPGARLAGRKMSIGAYRKLLHRLAAEGHDLS 210
                     79********************************************************************************************* PP

       GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
                      +vDLkdhWA+HGtnkfv i+
  XP_010920037.1 211 YAVDLKDHWARHGTNKFVIIK 231
                     ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.0E-734231IPR010409GAGA-binding transcriptional activator
SMARTSM012265.7E-7421231IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSSYINRDSI IGECNSGVSA MDFSWIPQRS FLSQTKNMNS THATPVNSEM MDVQGMPVAA  60
EGAMQNGVLE AKPLRVRKQH RSTKKNNHTA AKVLRQKEPK KQPSVPAKRK GSSTSMGKRE  120
KKTQDIIVDG TMVDFSNVPV PVCSCTGVPH QCYRWGAGGW QSSCCTMSIS EYPLPMSPSR  180
PGARLAGRKM SIGAYRKLLH RLAAEGHDLS YAVDLKDHWA RHGTNKFVII K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120039.11e-174protein BASIC PENTACYSTEINE7
SwissprotO822867e-60BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A2H3XTM71e-158A0A2H3XTM7_PHODC; protein BASIC PENTACYSTEINE7 isoform X2
STRINGXP_008788595.11e-157(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.43e-62basic pentacysteine 7