PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920063.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 236aa    MW: 27149.6 Da    PI: 8.7957
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920063.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-17118169556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++keq   Lee F+++ +++ +++  +A++l+L  rqV vWFqNrRa+ k
  XP_010920063.1 118 LRLSKEQSSYLEERFKEHTTLNPKQKLAIARRLNLRPRQVEVWFQNRRARTK 169
                     5789**********************************************98 PP
2HD-ZIP_I/II118.34.1e-38116202288
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     kk+rlskeq++ LEe F+e+++L+p++K ++ar+L+l+prqv+vWFqnrRARtk+kq+E+dye+Lk++ + l+een+rL+ke +eL+
  XP_010920063.1 116 KKLRLSKEQSSYLEERFKEHTTLNPKQKLAIARRLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKQWREYLTEENRRLHKEIQELK 202
                     9*************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-1691172IPR009057Homeodomain-like
SuperFamilySSF466891.41E-17105172IPR009057Homeodomain-like
PROSITE profilePS5007116.034111171IPR001356Homeobox domain
SMARTSM003891.1E-13113175IPR001356Homeobox domain
PfamPF000466.3E-15118169IPR001356Homeobox domain
CDDcd000862.84E-12119172No hitNo description
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PfamPF021836.6E-8171203IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.8E-17171214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEVASSACNG DCSSSKQSRA SRQEPNLMDK DGGALMIHPS LQLELKISWL AETDLEGNID  60
EAKSRRGLNV KEATRDADDT CDDMKPSSST SHSMTAERGF EQCRNGGKGE GGKGGKKLRL  120
SKEQSSYLEE RFKEHTTLNP KQKLAIARRL NLRPRQVEVW FQNRRARTKL KQTEVDYEYL  180
KQWREYLTEE NRRLHKEIQE LKSFESPIQN VYHFMQPTML TICPSCQHAI GLQKNW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920063.11e-178homeobox-leucine zipper protein HOX11
SwissprotA2Z1U11e-49HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE28e-49HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A2H3XUR01e-138A0A2H3XUR0_PHODC; homeobox-leucine zipper protein ATHB-4-like isoform X1
STRINGXP_008788847.11e-139(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-46homeobox from Arabidopsis thaliana