PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920264.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family E2F/DP
Protein Properties Length: 429aa    MW: 47385.8 Da    PI: 4.8907
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920264.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.61.6e-26148213171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf++ll+++++g+++ln +a+ L   dv  ++RRiYDi+NVLe+++liek+ kn+irwkg
  XP_010920264.1 148 RYDSSLGLLTKKFISLLQRADDGTLDLNRAAEIL---DV--QKRRIYDITNVLEGVGLIEKTLKNRIRWKG 213
                     6899******************************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-28144214IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.87E-17148211IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.5E-34148213IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.7E-24150213IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146608.65E-43224331No hitNo description
SuperFamilySSF1440741.12E-29225330No hitNo description
PfamPF164215.3E-29230328IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSGVEGSSLQ PAELRLPSPH QRAPQILRPA AHRHFPFSPA PRPSSPTPGL DPHALPCRSL  60
GPADKDRIAD VKKQTNGTEI DKVESGEGAV GQGQKEETGS LILPTESATG AKRPRKPKPS  120
KQKKTVQQQV LGAAEGNLSN ILNTSSCRYD SSLGLLTKKF ISLLQRADDG TLDLNRAAEI  180
LDVQKRRIYD ITNVLEGVGL IEKTLKNRIR WKGIDMSRPK ELDDQITAFK AEVETLYAED  240
CRLDGMIREM QDNLRILTED ENNQKWLYLT NDDINSLPCF EDSTLIAIRA PHGTSIEVPN  300
PDEGLDFPQR RYQILFRSSM GPIDMYLISN HGEIYEASNQ NQQPAAMDLC AETSSKNDTS  360
FQPADQNTGG TSERGHDQVT QNNSSGSVTS QDCTGAILKI APSDNDMDAD YWFLTDHGAS  420
ITDTWRTEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-23148214774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120088.10.0transcription factor E2FB isoform X1
TrEMBLA0A3Q0IJD20.0A0A3Q0IJD2_PHODC; transcription factor E2FB-like isoform X2
STRINGXP_008807578.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-94E2F transcription factor 1