PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920486.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 816aa MW: 93711.5 Da PI: 6.9955

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920486.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.3	1.4e-24	82	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 YneY+k++GF +rk+ ++sk n+ i+ ++vCs++g +++ k+ ++r +tr+gC a+lkvk++ +kw+vt++ +eHnHel XP_010920486.1 82 LYNEYSKRMGFGIRKKLCRRSKANNDIIAGWYVCSRQGAYARRGKT----ANPRFVTRVGCPAELKVKRMAIKKWQVTDFIKEHNHELD 166 6***************************************9988....99*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-21	82	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-26	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.039	556	592	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-7	565	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.2E-6	567	594	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
MESTPNLESE IGLEVDDTEM DAETSLDEDD KEQEFEEASK KGDSVSTAEL HSPLMTPNST 60 EGINLEPFVG MIFESEVEAY HLYNEYSKRM GFGIRKKLCR RSKANNDIIA GWYVCSRQGA 120 YARRGKTANP RFVTRVGCPA ELKVKRMAIK KWQVTDFIKE HNHELDPENA RLFRSHRKFQ 180 APEQNLVEIV SRNVGIRDQV NVVDKEQQRF LSAADTHALH MHFMRMHSKN PAFSYAVDLD 240 EKQRVRNAFW VDAISKVAYT HFGDVVMLDT AFLTSRFKMP LVSFVGVNHH GQSILLGCGL 300 LVDETPASYV WLFKAWLEAM SGQPPKALIT DRSNSITAAV AEVFPGTCHR FCLCCICKRV 360 SEKVGYLWRT QANFMKKFYK CIFDSLTVDE FEKRWSKFIQ HFGLMNDEWL QGLYDDRRRW 420 VLVYIKDTFF AGMSTSQRGE SLNLFLDKHV NRHTSLKEFL EKYELVLESK YEEEAQEDSR 480 SVHIMPEERM HPSPFELQMA NVYTRNIFEK FQAEVLGISS VFASKIEEDE ENTIFAVKAY 540 EVQEDSRDKK VKEREYRIIW NAEARRIYCI CRLFEFKGYL CRHALAVFLA SSVVEIPSHY 600 ILKRWTKDAK AINVLNAGLN EKDDCSASVT QRFNDICVRC IKLAQEASLS KKSYDVALQA 660 LQEALEKVVY ENNRPRRIIQ NYNPRGSTYY KTNEGSQANN IGTPMLYVPN QPGTMLVVCN 720 PEAFQMAATS NKRVKRGAER RGSKQKEHKS GDCMQLCHSV TTSTEILHVC SGVNTMLTGC 780 STQMTVEPMD QLNQEPSVNA ANNNQDIRLD MGDNSY

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

MESTPNLESE IGLEVDDTEM DAETSLDEDD KEQEFEEASK KGDSVSTAEL HSPLMTPNST  60
EGINLEPFVG MIFESEVEAY HLYNEYSKRM GFGIRKKLCR RSKANNDIIA GWYVCSRQGA  120
YARRGKTANP RFVTRVGCPA ELKVKRMAIK KWQVTDFIKE HNHELDPENA RLFRSHRKFQ  180
APEQNLVEIV SRNVGIRDQV NVVDKEQQRF LSAADTHALH MHFMRMHSKN PAFSYAVDLD  240
EKQRVRNAFW VDAISKVAYT HFGDVVMLDT AFLTSRFKMP LVSFVGVNHH GQSILLGCGL  300
LVDETPASYV WLFKAWLEAM SGQPPKALIT DRSNSITAAV AEVFPGTCHR FCLCCICKRV  360
SEKVGYLWRT QANFMKKFYK CIFDSLTVDE FEKRWSKFIQ HFGLMNDEWL QGLYDDRRRW  420
VLVYIKDTFF AGMSTSQRGE SLNLFLDKHV NRHTSLKEFL EKYELVLESK YEEEAQEDSR  480
SVHIMPEERM HPSPFELQMA NVYTRNIFEK FQAEVLGISS VFASKIEEDE ENTIFAVKAY  540
EVQEDSRDKK VKEREYRIIW NAEARRIYCI CRLFEFKGYL CRHALAVFLA SSVVEIPSHY  600
ILKRWTKDAK AINVLNAGLN EKDDCSASVT QRFNDICVRC IKLAQEASLS KKSYDVALQA  660
LQEALEKVVY ENNRPRRIIQ NYNPRGSTYY KTNEGSQANN IGTPMLYVPN QPGTMLVVCN  720
PEAFQMAATS NKRVKRGAER RGSKQKEHKS GDCMQLCHSV TTSTEILHVC SGVNTMLTGC  780
STQMTVEPMD QLNQEPSVNA ANNNQDIRLD MGDNSY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920486.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_019704575.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBL	A0A3Q0I0F3	0.0	A0A3Q0I0F3_PHODC; protein FAR1-RELATED SEQUENCE 4-like
STRING	XP_008789325.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-162	FAR1 family protein