PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920510.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 279aa    MW: 31256.1 Da    PI: 8.0828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920510.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00025981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010920510.1 59 YSCSFCRREFRSAQALGGHMNVH 81
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-65685No hitNo description
PROSITE profilePS5015711.2195986IPR007087Zinc finger, C2H2
SMARTSM003550.00985981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDATRYWMWS RRKLSERPLS PRIPPISAGS SYSESWEEQA FAEDSAGHLG GCIWPPRSYS  60
CSFCRREFRS AQALGGHMNV HRRDRARLKQ SSSPTSEAIE NSHHHHLNPC VPPIRAPQLG  120
PLVYNSNPKP NLNCGVVESP LSPSKVSAAS TQENLSEHTL IPPSHSSCAI RENLKESLFS  180
TTTSPKASIP VGLFAIPELK LGRENLSLRE VGCQARRDPD EEEEEAISIK KRRIDSTSFF  240
VRRSSDDRPQ DQAEVLKFSP RPVEELDLEL RLGDPPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135481229superman protein
2l1o_A8e-135481229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706194.10.0zinc finger protein 10
TrEMBLA0A2H3YPE41e-169A0A2H3YPE4_PHODC; zinc finger protein 10
STRINGXP_008801652.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-30C2H2 family protein