PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920528.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CPP
Protein Properties Length: 560aa    MW: 60770.3 Da    PI: 7.7632
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920528.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.31.5e-1399138242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  XP_010920528.1  99 RKKNCNCKHSRCLKLYCECFASGVYCDG-CNCANCCNNVEN 138
                     689*************************.********9875 PP
2TCR51.32.3e-16183222140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_010920528.1 183 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 222
                     589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-1298138IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.09599223IPR005172CRC domain
PfamPF036381.3E-9100135IPR005172CRC domain
SMARTSM011146.2E-20183224IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12186221IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEQGIGPAAS APSDLPPKKL VRQLDFTTAY GGASPAMAAA AAAVSKALEK PSQQQQQQQS  60
LPPPPPPISR PPFPIAVKPE SPKLRSRPLY EGKDGTPTRK KNCNCKHSRC LKLYCECFAS  120
GVYCDGCNCA NCCNNVENET ARHEAVEATL ERNPNAFRPK IGSSPHAARD SREEAGDLPL  180
LGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN YEGSEERRAL FRGDHGNALY  240
MQHAANAALN GAIGPSGFIS PSTSKKRKSQ ELFFNTSAKD QPIRRLGQAS HLKTSVPAAS  300
FPSVPVARAV NPAPSGSSKV TYRSLLADVV HTEDAKKLCK VLVAVSGEAA KTFADGKAQE  360
KLGEMEDPTE SSLALSNDDR GEHHQEPDAQ KASADECSGG THADKTSMQE SVSDFADGQK  420
GVRPMSPGTL ALMCDEQDTL FMTAQDNGIP PRFPYKQNMS EVYAEQERCV LMEFRDYLHN  480
LVNRGRMKES KYSSMAMKSE PSSHQELTVN GVDRAHLSNS EETSQTVRAF PANSSKYPPV  540
AQPIPGNDGD IKPRTENLDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-3010023111131Protein lin-54 homolog
5fd3_B5e-3010023111131Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920528.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-160TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2H3XVD40.0A0A2H3XVD4_PHODC; protein tesmin/TSO1-like CXC 5
STRINGXP_008789327.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-152Tesmin/TSO1-like CXC domain-containing protein