PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920544.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 326aa    MW: 36283.3 Da    PI: 4.6661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920544.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.2e-32116172258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers++dp+++++tYeg H h
  XP_010920544.1 116 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSTDDPETLIVTYEGLHLH 172
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.059110175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-30111173IPR003657WRKY domain
SuperFamilySSF1182906.15E-27113173IPR003657WRKY domain
SMARTSM007741.1E-37115174IPR003657WRKY domain
PfamPF031063.6E-26116172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEEVDEYSEA NWLDASCEEL VRELLDDTTP FFVSPKVTEP EPDTSRESMI NNLISTVYSG  60
PTIGDVESAL SVTFQSGESD GHGGSRPIIS LPEKGLGKME SKYTLRIKTC GNGLADDGYK  120
WRKYGQKSIK NSPNPRSYYR CTNPRCNAKK QVERSTDDPE TLIVTYEGLH LHYTYSHFFL  180
SRPHDYSTTN LHVSKKPRIQ SMSMQTHVAD YPLTESTVWS PSVMEQQQLQ PGVSGDQSPE  240
GDVLEVVVQS PVREDISQQG FLEDLMQSPQ GLLEDVVPLL VRKPSHSTTS SYDPHSLSPA  300
SSPSYSSLSW TPSFSYLDVG ILSGII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-211141721674Probable WRKY transcription factor 4
2lex_A4e-211141721674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920544.10.0probable WRKY transcription factor 49
TrEMBLA0A2H3X2G50.0A0A2H3X2G5_PHODC; probable WRKY transcription factor 49
STRINGXP_008777314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-45WRKY DNA-binding protein 49