PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920697.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 153aa MW: 17148.9 Da PI: 8.9357

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920697.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_010920697.1 42 YECKTCNRRFPTFQALGGHRTSH 64 99**********99998888877 PP
2	zf-C2H2	14.5	0.0001	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H XP_010920697.1 87 HECPICGLEFPMGQALGGHMRRH 109 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	23	No hit	No description
SuperFamily	SSF57667	1.37E-8	40	109	No hit	No description
Pfam	PF13912	6.1E-13	41	66	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.055	42	69	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.096	42	64	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.1E-12	86	110	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.162	87	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.05	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MAGREEGEME SPNMANLLLL LSCNGAKARN MHGIKKPTGR VYECKTCNRR FPTFQALGGH 60 RTSHMRPRFR RDWVEQTKKE RPKPRVHECP ICGLEFPMGQ ALGGHMRRHK PTEADEACTE 120 KKGGAGKVLC LDLNLTPLEN DLELTALELG LAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920697.2	1e-109	zinc finger protein ZAT12
TrEMBL	A0A2H3YAC2	6e-75	A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like
STRING	XP_008794835.1	1e-96	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	5e-36	C2H2 family protein