PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920848.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 260aa    MW: 31101 Da    PI: 9.3761
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920848.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.78.8e-2534115186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++ e+++ +++r e+++++ ++k++kplWe++s++++++gf+r+p+qCk+kw+nl +r+k i+++e+++    s+++p+ ++++
  XP_010920848.1  34 QWSNAETKEFLAVRAELDRSFMETKRNKPLWEAISARLQQKGFTRTPEQCKSKWKNLVTRFKGIEAMEGEG----SRQFPFHEEMR 115
                     7********************************************************************97....78899999996 PP
2Myb_DNA-binding22.72.4e-073590447
                     S-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47
                     W+  E + ++ + ++l             W++I+++++    +Rt++qcks+w ++
   XP_010920848.1 35 WSNAETKEFLAVRAELDRSfmetkrnkpLWEAISARLQqkgFTRTPEQCKSKWKNL 90
                     88888888888888888668888999999**********9989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0722791IPR017877Myb-like domain
SMARTSM007173.4E-73193IPR001005SANT/Myb domain
CDDcd122039.25E-203398No hitNo description
PfamPF138373.6E-2034116No hitNo description
Gene3DG3DSA:1.10.10.607.2E-53490IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MELHHHYNPY YLNVNPLPEG SGGERDRERD RFPQWSNAET KEFLAVRAEL DRSFMETKRN  60
KPLWEAISAR LQQKGFTRTP EQCKSKWKNL VTRFKGIEAM EGEGSRQFPF HEEMRTIFSE  120
RMERLLVSNK DKGKGVQVQG EEWGEEEEEG SWGRSKKKRK VERIRRGFEE GVENAFKEFA  180
RRQLEIQARW IASAEAREAE RRAKEEEWRR TMVALEEERK AMERTWREKE EERRAREEAR  240
AERRDALLTA LLAKIEKEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1335113786DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120206.11e-137trihelix transcription factor GT-3b-like
SwissprotO804503e-50TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A3Q0I3A71e-105A0A3Q0I3A7_PHODC; trihelix transcription factor GT-3b
STRINGXP_008795368.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-39Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]