PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920864.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-X1
Protein Properties Length: 891aa    MW: 99594.5 Da    PI: 8.4139
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920864.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.11.2e-05295314120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CGkHkC + CH GpC+ Cp+
  XP_010920864.1 295 CGKHKCDRGCHAGPCGNCPL 314
                     ******************95 PP
2zf-NF-X116.22.3e-05402421120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C + C+ G+Cp+Cp+
  XP_010920864.1 402 CGRHACRRRCCDGDCPSCPE 421
                     ******************96 PP
3zf-NF-X116.41.9e-05429448120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     C++HkC ++CH+G C pCp+
  XP_010920864.1 429 CSNHKCLSPCHRGACVPCPL 448
                     88****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.0E-576151No hitNo description
PROSITE patternPS01359083144IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.74283145IPR001841Zinc finger, RING-type
SMARTSM004380.032190208IPR000967Zinc finger, NF-X1-type
CDDcd060081.18E-10232280No hitNo description
SMARTSM004380.0096242261IPR000967Zinc finger, NF-X1-type
CDDcd060086.90E-9285328No hitNo description
SMARTSM004380.0041295314IPR000967Zinc finger, NF-X1-type
CDDcd060087.02E-8339388No hitNo description
SMARTSM004380.12349369IPR000967Zinc finger, NF-X1-type
CDDcd060081.27E-7392440No hitNo description
SMARTSM004380.037402421IPR000967Zinc finger, NF-X1-type
CDDcd060081.32E-9419467No hitNo description
SMARTSM004380.066429448IPR000967Zinc finger, NF-X1-type
SMARTSM0043847492507IPR000967Zinc finger, NF-X1-type
SMARTSM00438170515560IPR000967Zinc finger, NF-X1-type
SMARTSM0043834597624IPR000967Zinc finger, NF-X1-type
SMARTSM004380.078656674IPR000967Zinc finger, NF-X1-type
SMARTSM004380.19719740IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MAATATSTGR FPIQNPNPPS DIVFSDSDAS SGSGGEEAAG QRTALEDSIF DAYLQISGRS  60
APDLSKIRSF LASTSGRGPY VACLICLERV RPSDPAWSCS SGCYALFHLF CIQSWAHQSS  120
HRPPSTTQPA AAAAASTDWP CPKCRLPYPR TLIPRSYLCF CGKVEDPLAD PWILPHSCGE  180
VCGRPLSGNC GHHCLLLCHP GPCPPCPKLV TSRCFCGSRE DVRRCAQKHF SCNQPCPKPL  240
PCRTHRCPER CHEGPCPPCE VRGMYRCACG KTEEERECSE RGFRCERPCD GMLSCGKHKC  300
DRGCHAGPCG NCPLQGRRTC PCGKKEYRGV SCDANMPTCG STCEKMLSCR IHQCPERCHR  360
GPCVETCRTV VVKSCRCRSL KKEVPCYQEL VCERKCQRLR DCGRHACRRR CCDGDCPSCP  420
EICGRKLRCS NHKCLSPCHR GACVPCPLMV SISCSCGETR FEVPCGTEKS QKPPKCSKQC  480
HISRLCIHAS ECRRHKCHYG ACPPCRMICG DKLPCGHNCK ERCHGPMPPP NPEFTLKPKK  540
KKVDKHIEYI PGSPCPPCQE VVWISCFGQH VGEERPMVCS NKRQFACQNL CGNLLSCGNH  600
YCTKPCHVLK SQQLKLDQHE RCNNEQALIP LDAESGLAES CEECFLPCQK VRKPSCSHPC  660
PLPCHSNDCP PCKVLVKRSC HCGAMVHVFE CIYYNSLSDK EQQRVRSCGG PCHRKLSSCP  720
HLCSETCHPG PCPSIDQCLK KVTVRCACNN LKNEWLCRDV QKEYRNAGRD PRDVSKSHFG  780
VALLPCSVNC PSKIKVVESE LQLRKTREAK SPVVEVSNVP KRRKRRERVQ ETRQASKFQA  840
IKETLWRCVC FILIFLMIIA SAYYGYKGLF RLSDWMNEIE ERRPRQRFPR A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1819825PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920864.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2H3Y4R20.0A0A2H3Y4R2_PHODC; NF-X1-type zinc finger protein NFXL2
STRINGXP_008793296.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors