PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920920.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 199aa MW: 21558.4 Da PI: 5.9777

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920920.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.5	2.1e-42	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_010920920.1 41 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLA 135 7********************************************************************************************** PP DUF260 96 llkee 100 ++++ XP_010920920.1 136 RAQAD 140 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.002	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-43	41	138	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGSSDTTTTF HHHASSSSPS SSPTSSPPSL PPTPPPVVLS PCAACKILRR RCVDKCVLAP 60 YFPPTEPLKF TTAHRVFGAS NIIKFLQDLP ESQRADAVSS MVYEANARIR DPVYGCAGAI 120 CQLQKQVSEL QAQLARAQAD LVNMQAQQAN LIALVCVEMA QSQQPPAESL ITSPYVSQND 180 TFFLDDSSHG SLWEDPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	36	152	6	122	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	36	152	6	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920920.1	1e-145	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-75	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2H3Y960	1e-111	A0A2H3Y960_PHODC; LOB domain-containing protein 1
STRING	XP_008795252.1	1e-112	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-65	LOB domain-containing protein 1