PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920929.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 163aa    MW: 17714.8 Da    PI: 5.9819
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920929.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.41e-5826122197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflP+an+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedyv+plk+yl+kyre+eg
  XP_010920929.1  26 VREQDRFLPVANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYVDPLKLYLQKYREMEG 120
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_010920929.1 121 DS 122
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.6E-5521136IPR009072Histone-fold
SuperFamilySSF471131.01E-4029133IPR009072Histone-fold
PfamPF008085.7E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-226078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-227997No hitNo description
PRINTSPR006153.8E-2298116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAEAPASPGW GGSHESGGDQ SPRSNVREQD RFLPVANISR IMKKALPANG KIAKDAKETV  60
QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG FEDYVDPLKL YLQKYREMEG  120
DSKLSAKGGD GSVKKEGGGF QGGTQVAQQG SFTQGMNYMN PQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4925117193NF-YB
4awl_B1e-4927117494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4927117494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920929.11e-119nuclear transcription factor Y subunit B isoform X3
SwissprotQ8VYK43e-82NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2H3Y2161e-96A0A2H3Y216_PHODC; nuclear transcription factor Y subunit B-like
STRINGXP_008792219.12e-97(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-78nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]