PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920949.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 460aa    MW: 50738.4 Da    PI: 7.4057
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920949.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.5e-17163212155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010920949.1 163 SRYRGVTFYRRTGRWESHIWD------CgKQIYLGGFDTAHAAARAYDRAAIKFRG 212
                     79*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-16163221IPR016177DNA-binding domain
PfamPF008475.7E-9163212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-17164221IPR001471AP2/ERF domain
SMARTSM003802.2E-32164226IPR001471AP2/ERF domain
PROSITE profilePS5103217.886164220IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6255299IPR016177DNA-binding domain
CDDcd000189.45E-13255300No hitNo description
SMARTSM003803.9E-13256304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MMMLDLNLAS SGESLAFQEK PLPDEDSGTS KSSVLNAEAS SNTPDEDSCS TRPAAGFRFG  60
ILKSSASAEG ENVVKEEIEE DGNDASLESS FITRQLFPLA SAAVPERLQP PLVAASSSSS  120
SRQQWADLNF RQSIPADVRV VQQQQQQQPQ VKKSRRGPRS RSSRYRGVTF YRRTGRWESH  180
IWDCGKQIYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEELKQ MKNLSKEEFV  240
HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG RDAVTNFEPS  300
TYEGELLTEA ADSQATGHDV DLNLRISQPV ACSPMRDQDS MGIQFHFGSR SDAKKATIDI  360
PSSHLAGEPH HLLTAQYPII FPTIEERARE KRTEVGSQSL SNWAWQVDGP TLLPLFSSAA  420
SSGFSTSSVA AAHPSSLPPP SSTLHSHFNP PAPFNFLFRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920949.10.0APETALA2-like protein 1 isoform X2
SwissprotB8AXC31e-116AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2H3XUP70.0A0A2H3XUP7_PHODC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_008789029.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-97related to AP2.7