PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920989.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 291aa MW: 31753 Da PI: 9.7341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920989.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F r nL+ H r+H XP_010920989.1 62 YVCGVCKRGFERDQNLQLHKRSH 84 9********************99 PP
2	zf-C2H2	11.4	0.001	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk++ ++k+H +++ XP_010920989.1 138 WRCENCGKMYAVEADMKVHFNRC 160 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.5E-5	61	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.26E-5	61	85	No hit	No description
PROSITE profile	PS50157	10.699	62	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	78	103	133	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	120	138	158	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	90	165	185	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MSADAPAVPF SAQSLPGETN RNLTPQQQIP QPKRKRNGPG RPDPTAEVVA LSPERLLATG 60 VYVCGVCKRG FERDQNLQLH KRSHNLVVSL KKSGTHKKRK RVYVCPEPSC VYHDPTRALG 120 DITGIKKHYL RKHCSRRWRC ENCGKMYAVE ADMKVHFNRC STGNFRCERC GKESNRKRSC 180 AAHQKDCNVA NPRGVPMMAH EGGNGVSNVV QGVTASNASH PLMAPSFANF NEGMGSNASW 240 TTGGYAVGGE WNAENYAGPG GCVGNGAAWF GGNDSGLPPM DALAYMSWMR F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029120205.1	1e-177	protein indeterminate-domain 6, chloroplastic-like
Swissprot	Q8GYC1	5e-60	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A2H3Y9B4	1e-111	A0A2H3Y9B4_PHODC; zinc finger protein MAGPIE
STRING	XP_008795394.1	1e-95	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50792	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	8e-60	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]