PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921002.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 193aa    MW: 21864 Da    PI: 11.4358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921002.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001696118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F++   L  H+++H
  XP_010921002.1  96 HECSLCPKRFRTGRALGGHMKSH 118
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.6E-484118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.11E-692122No hitNo description
PfamPF139121.2E-1095120IPR007087Zinc finger, C2H2
PROSITE profilePS501579.34996118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTRAETPSPP LITWSLTGKR GRKIPQPTHR EPESQERDIA RFLLTLSSRP PAPDGDLRRL  60
GEAVANTGSC RWDGDGERIR RSRRRRRRAT TKARVHECSL CPKRFRTGRA LGGHMKSHWE  120
RDLHGRVVKK KTRKLSSLLG LGLGLRFDLE LDLPSPSPPN PKLLVFSSAG KERKERDEEY  180
GGDSLAVDPL FPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986RRSRRRRR
27987RRSRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699093.12e-61zinc finger protein ZAT10-like
TrEMBLA0A2H3ZSH75e-60A0A2H3ZSH7_PHODC; zinc finger protein ZAT10-like
STRINGXP_008794234.19e-61(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-07C2H2-like zinc finger protein