PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921149.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 839aa MW: 92497.1 Da PI: 7.2188

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921149.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	6.7e-19	281	380	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_010921149.1 281 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 373 99************************555566778***********99899999999.*******************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_010921149.1 374 LVMGFRK 380 7777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-30	273	383	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.55E-21	278	381	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.34E-23	279	380	No hit	No description
SMART	SM01019	9.4E-22	281	381	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-16	281	380	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.42	281	382	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.569	519	569	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.8E-13	524	566	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MGAEIGRIRE PLQQMRRLHC GCIASKFSFD LLDNGGVQCI SCMKNSEISF VSSEAMQNFL 60 PQHNQRLLVG SECDLSTSSA ETKMDDSAVG KGKGIMQLVR NNDTNKQRIV SLEQREGENG 120 SSQPIRWDHL AYNTGEVGKL SFSSRNQGAI MSSQMSQQHD MISESLAQAC LSMTLGTSDA 180 ERPLMVLPPT NALAEGGDQN KASSTFQQVQ RARQFLPRLP KAGSGATPEV SKDGASHMRV 240 ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK 300 ACAEAYFPPI SQPEGLPLTI QDAKGKEWHF QFRFWPNNNS RMYVLEGVTP CIQSLQLQAG 360 DTVTFSRIDP EGKLVMGFRK ATNTVPLQQD SQISAIANSA VGNETFLPGV NENLPIATGY 420 PGLLLSYHQT DKHGGRPNDG LQLQPVQKRS RNIGTKSRRL LMDSEDALEL TLTWGEAQDL 480 LRPAPNSRPS IVMIDDHEIE EYDEPPVLGK KTIYTARLTG ERDQWIQCDA CSKWRRLPVD 540 VLVLSKWTCA DNTWDPKRSS CHAPEELSQK DLQSLLRQYA DYRRQRMNAK QHCAELDASS 600 GLDALANAAA LGDVSNQTTS SVATTTKHPR HRPGCTCIVC IQPPSGKGPK HSPTCTCNVC 660 LTVKRRFKTL MMRKKKRQSE REEAEAQKRL AWGNKEELEG DSLSRRSVQP LDVHRECELG 720 QGPGYGRTIV EKVDMSKGQI DLNCHPGRDE VPQAGPPRQS MMSLLQEANL PLEMYLKQNG 780 LTSLVGEQGS SSSHTIPQGP GESDGRTPDE SHFASVAQER DGGADEAHDS PDKARSDTA

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MGAEIGRIRE PLQQMRRLHC GCIASKFSFD LLDNGGVQCI SCMKNSEISF VSSEAMQNFL  60
PQHNQRLLVG SECDLSTSSA ETKMDDSAVG KGKGIMQLVR NNDTNKQRIV SLEQREGENG  120
SSQPIRWDHL AYNTGEVGKL SFSSRNQGAI MSSQMSQQHD MISESLAQAC LSMTLGTSDA  180
ERPLMVLPPT NALAEGGDQN KASSTFQQVQ RARQFLPRLP KAGSGATPEV SKDGASHMRV  240
ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK  300
ACAEAYFPPI SQPEGLPLTI QDAKGKEWHF QFRFWPNNNS RMYVLEGVTP CIQSLQLQAG  360
DTVTFSRIDP EGKLVMGFRK ATNTVPLQQD SQISAIANSA VGNETFLPGV NENLPIATGY  420
PGLLLSYHQT DKHGGRPNDG LQLQPVQKRS RNIGTKSRRL LMDSEDALEL TLTWGEAQDL  480
LRPAPNSRPS IVMIDDHEIE EYDEPPVLGK KTIYTARLTG ERDQWIQCDA CSKWRRLPVD  540
VLVLSKWTCA DNTWDPKRSS CHAPEELSQK DLQSLLRQYA DYRRQRMNAK QHCAELDASS  600
GLDALANAAA LGDVSNQTTS SVATTTKHPR HRPGCTCIVC IQPPSGKGPK HSPTCTCNVC  660
LTVKRRFKTL MMRKKKRQSE REEAEAQKRL AWGNKEELEG DSLSRRSVQP LDVHRECELG  720
QGPGYGRTIV EKVDMSKGQI DLNCHPGRDE VPQAGPPRQS MMSLLQEANL PLEMYLKQNG  780
LTSLVGEQGS SSSHTIPQGP GESDGRTPDE SHFASVAQER DGGADEAHDS PDKARSDTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	6e-68	259	388	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	663	674	KRRFKTLMMRKK
2	663	676	KRRFKTLMMRKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019706434.1	0.0	B3 domain-containing protein Os07g0679700 isoform X3
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2H3ZKX8	0.0	A0A2H3ZKX8_PHODC; B3 domain-containing protein Os07g0679700-like isoform X3
STRING	XP_008782658.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]