PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921150.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 805aa    MW: 88790.8 Da    PI: 7.2237
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921150.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-19247346198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_010921150.1 247 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 339
                     99**************************555566778***************9989999999***9.********************987.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_010921150.1 340 LVMGFRK 346
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-30239349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-21244347IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-23245346No hitNo description
PfamPF023623.3E-16247346IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42247348IPR003340B3 DNA binding domain
SMARTSM010199.4E-22247347IPR003340B3 DNA binding domain
PROSITE profilePS5105014.569485535IPR011124Zinc finger, CW-type
PfamPF074961.7E-13490532IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MGAEIGRIRE PLQQMRVSSE AMQNFLPQHN QRLLVGSECD LSTSSAETKM DDSAVGKGKG  60
IMQLVRNNDT NKQRIVSLEQ REGENGSSQP IRWDHLAYNT GEVGKLSFSS RNQGAIMSSQ  120
MSQQHDMISE SLAQACLSMT LGTSDAERPL MVLPPTNALA EGGDQNKASS TFQQVQRARQ  180
FLPRLPKAGS GATPEVSKDG ASHMRVARPP AEGRGRNQLL PRYWPRITDQ ELQQISGDSN  240
STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLTIQDAK GKEWHFQFRF  300
WPNNNSRMYV LEGVTPCIQS LQLQAGDTVT FSRIDPEGKL VMGFRKATNT VPLQQDSQIS  360
AIANSAVGNE TFLPGVNENL PIATGYPGLL LSYHQTDKHG GRPNDGLQLQ PVQKRSRNIG  420
TKSRRLLMDS EDALELTLTW GEAQDLLRPA PNSRPSIVMI DDHEIEEYDE PPVLGKKTIY  480
TARLTGERDQ WIQCDACSKW RRLPVDVLVL SKWTCADNTW DPKRSSCHAP EELSQKDLQS  540
LLRQYADYRR QRMNAKQHCA ELDASSGLDA LANAAALGDV SNQTTSSVAT TTKHPRHRPG  600
CTCIVCIQPP SGKGPKHSPT CTCNVCLTVK RRFKTLMMRK KKRQSEREEA EAQKRLAWGN  660
KEELEGDSLS RRSVQPLDVH RECELGQGPG YGRTIVEKVD MSKGQIDLNC HPGRDEVPQA  720
GPPRQSMMSL LQEANLPLEM YLKQNGLTSL VGEQGSSSSH TIPQGPGESD GRTPDESHFA  780
SVAQERDGGA DEAHDSPDKA RSDTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-682253542131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1629640KRRFKTLMMRKK
2629642KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706435.10.0B3 domain-containing protein Os07g0679700 isoform X4
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2H3ZKX80.0A0A2H3ZKX8_PHODC; B3 domain-containing protein Os07g0679700-like isoform X3
STRINGXP_008782658.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]