PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921291.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 366aa MW: 40950.1 Da PI: 6.605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921291.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184.1	3.4e-57	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL +kv ++ +++ ++ +vd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010921291.1 16 LPPGFRFHPTDEEIITHYLSPKVLNHGFSA-IAVGDVDLNKCEPWDLPSKAKMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYRG 109 79***********************999.88***********99999************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfykgrapkgekt+Wvmheyrle XP_010921291.1 110 RGILVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-63	12	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.648	16	167	IPR003441	NAC domain
Pfam	PF02365	5.6E-30	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVDAPVLNKG EDSIDLPPGF RFHPTDEEII THYLSPKVLN HGFSAIAVGD VDLNKCEPWD 60 LPSKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYRGR GILVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLEGKAPYSN LPKTIKDAWV VSRVFHKNIG IKKSPMLGLE 180 RMSSFGDDFL DSSTLPPLLD PPYYNSNIRP SPSYINDGEG FEFKGIPSSS SSMPSFYSSM 240 LGVENQQGIS PQASSGNQHQ NAVFYAQVPP QSPYFSLPEA PNLGYLHQDD AILRALGATN 300 DASSAIRRTC KVEQYSNQSM VSPSQDTGLS TDHNTEISSV VSKHYDDLDD PCSAGPVMDL 360 ENMWKY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVDAPVLNKG EDSIDLPPGF RFHPTDEEII THYLSPKVLN HGFSAIAVGD VDLNKCEPWD  60
LPSKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYRGR GILVGMKKTL  120
VFYKGRAPKG EKTNWVMHEY RLEGKAPYSN LPKTIKDAWV VSRVFHKNIG IKKSPMLGLE  180
RMSSFGDDFL DSSTLPPLLD PPYYNSNIRP SPSYINDGEG FEFKGIPSSS SSMPSFYSSM  240
LGVENQQGIS PQASSGNQHQ NAVFYAQVPP QSPYFSLPEA PNLGYLHQDD AILRALGATN  300
DASSAIRRTC KVEQYSNQSM VSPSQDTGLS TDHNTEISSV VSKHYDDLDD PCSAGPVMDL  360
ENMWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	6e-52	14	173	15	171	NAC domain-containing protein 19
4dul_B	6e-52	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921292.1	0.0	NAC domain-containing protein 100
Refseq	XP_029120383.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-108	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2H3XF29	0.0	A0A2H3XF29_PHODC; NAC domain-containing protein 100-like isoform X1
STRING	XP_008782760.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-102	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]