PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921516.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CAMTA
Protein Properties Length: 959aa    MW: 107726 Da    PI: 7.3113
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921516.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1162.38.8e-51321454117
            CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                       +rw +++e++aiL n+++++++ ++ ++p sg+++L++rk++r+frkDGy+wkkkkdgktv+E+hekLK+g+ e +++yYa+ e++p+f rrc
  XP_010921516.1  32 GATRWFRPNEVHAILSNYTRFKIQPQPFDNPMSGTILLFDRKMLRNFRKDGYNWKKKKDGKTVQEAHEKLKIGNEERIHVYYARREDDPNFYRRC 126
                     389******************************************************************************************** PP

            CG-1  99 ywlLeeelekivlvhylev 117
                     ywlL+++le+ivlvhy+++
  XP_010921516.1 127 YWLLDKNLEHIVLVHYRQT 145
                     ****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.80225151IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-6128146IPR005559CG-1 DNA-binding domain
PfamPF038593.1E-4534144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812968.4E-12404490IPR014756Immunoglobulin E-set
PfamPF127961.8E-8592673IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.29E-18594711IPR020683Ankyrin repeat-containing domain
CDDcd002041.66E-16594704No hitNo description
Gene3DG3DSA:1.25.40.209.1E-19594712IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.953600716IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.514645677IPR002110Ankyrin repeat
SMARTSM002481.5E-5645674IPR002110Ankyrin repeat
SMARTSM00248950684713IPR002110Ankyrin repeat
SuperFamilySSF525402.66E-8761864IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.925795824IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7813835IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712814843IPR000048IQ motif, EF-hand binding site
PfamPF006120.013816834IPR000048IQ motif, EF-hand binding site
SMARTSM000150.17836858IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578837861IPR000048IQ motif, EF-hand binding site
PfamPF006128.4E-4839857IPR000048IQ motif, EF-hand binding site
SMARTSM000150.4917939IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.682918947IPR000048IQ motif, EF-hand binding site
PfamPF006120.24920939IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MEVGDWAPLA GAEIHGFQTA ADLHVEKLME DGATRWFRPN EVHAILSNYT RFKIQPQPFD  60
NPMSGTILLF DRKMLRNFRK DGYNWKKKKD GKTVQEAHEK LKIGNEERIH VYYARREDDP  120
NFYRRCYWLL DKNLEHIVLV HYRQTSEHLQ TPVECTDTLS LTNRMHHGCP STPMNSTSGS  180
AHSELSGSTV TSEEINSRED HATYTGSGIS LADNCTELQN HESCLREINT LDWADLVEPP  240
TFSDSVICRE GDASSPNQQT PNGFRNSINN DSFLPSHGVI KGVPSSGHPT DVINCNGVSV  300
VNHINCGYFQ AAKDPESGSP LFKTMNPTSQ VADLKLDAVP SCASPDILTG DVFLTQNSFG  360
RWNRMNDDTL VLLDDQLEAS SGGDKSNDFT IMNQSSTPEQ IFSIIDISPG WAYSTEETKV  420
LVVGHFNEPY KHLLASNIYC VFGEMHASAE MIHAGVYHCS AMPHPPGTVN FFVTLDGYTP  480
ISQVLSFDYR SVPCVQLNGG VASSEDDNKL KWKEFQVQTR LAHLLFSSTN NIXIQSNRMQ  540
SKSLNEAKRY ASITSPLLDK DWINLLTLSS NIDASYGPAT QDLFELVLKN KLQEWLLEKV  600
AEGCKTTAYD SQGQGAIHLC AILDYAWAVR FFSSTGMSLD FRDASGWTAL HWAAYCGREK  660
IVAALLSAGA NPSLVTDPTP ESLGGCTAAD LASKQGYGGL AAYLAEKGLT AHVQAMSLSG  720
NITAPMPPSP TNQVNSENVY PENLTEQELC LKESLAAYRN AADAAGRIQA AFKERILKQQ  780
MKAIRLVKPE IEAAQIVSAL KIQHAFRNYS RRRTMRAAAR IQSHFRTWRI RRNFLNMRKQ  840
TIKIQAAFRG HQVRRQYCKI LWSVGVLEKA VLRWRLKRKG LRGIRVVPKE AMKVDTEEES  900
TSEEEFFKIS REQAEERMKR SVVWVQAMFR SHRAQQEYRR MKLAHEQAKL EFGELGRQP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706318.10.0LOW QUALITY PROTEIN: calmodulin-binding transcription activator CBT-like
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A2H3XN330.0A0A2H3XN33_PHODC; calmodulin-binding transcription activator CBT isoform X2
STRINGXP_008786234.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators