PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921842.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 171aa    MW: 19323.9 Da    PI: 8.3903
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921842.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1512.3e-4732126296
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eq ++lPianv+rimk++lP+nakisk aket+qec+sefisfvt+easd+c +++rktingdd++ a+ tlG+++y++++k+yl +yre e++
  XP_010921842.1  32 SEQSHLLPIANVGRIMKQALPQNAKISKRAKETIQECASEFISFVTEEASDRCCKDNRKTINGDDICCAMKTLGLDEYADAMKIYLCRYREHEEK 126
                     6999***************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-4431143IPR009072Histone-fold
SuperFamilySSF471138.54E-3535134IPR009072Histone-fold
PfamPF008083.9E-2538101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.0E-136583No hitNo description
PRINTSPR006151.0E-1384102No hitNo description
PRINTSPR006151.0E-13103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDTSIDGQPY FRVRNSNVPR ATASTTPYGC TSEQSHLLPI ANVGRIMKQA LPQNAKISKR  60
AKETIQECAS EFISFVTEEA SDRCCKDNRK TINGDDICCA MKTLGLDEYA DAMKIYLCRY  120
REHEEKATSM KCNKPVQIDV NNELPIFQSS QSRDQLPSRS PQNAAKTRKF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-3833122392Transcription factor HapC (Eurofung)
4g92_B4e-3833122392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921842.11e-126nuclear transcription factor Y subunit B-4-like
SwissprotO040277e-41NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
SwissprotO822487e-41NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2H3ZGK71e-107A0A2H3ZGK7_PHODC; nuclear transcription factor Y subunit B-4-like
STRINGXP_008813182.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-43nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]