PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922068.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 232aa    MW: 25493.7 Da    PI: 6.1699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922068.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-1356102354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h e+E+rRR+ri+s +++Lr++l  +     +K +Ka+ L kAve++++L
  XP_010922068.1  56 RNHREAEKRRRERIKSHLDRLRTILACD-----PKTDKASLLAKAVEHVRDL 102
                     78************************98.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-1352110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.48153102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-1156102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1357112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-1159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MYRSLSGSHR DGGNADGSGA AVAMPGYFMA SLYPVEMGGG GGGGDAPLDR ALIASRNHRE  60
AEKRRRERIK SHLDRLRTIL ACDPKTDKAS LLAKAVEHVR DLKQRTADMT ETQLFPTEND  120
EIVVLPSSSS NGEGSVFEAS LCCEDRSDLL PELIETLRSL RLKTLRADIA TLGGRVRNVL  180
VLAREKEEYE EEKEEEEGSG GAFLRDALKA LVDRPVSDDR SKRRRVVDRG LA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922068.11e-165transcription factor bHLH106
TrEMBLA0A2H3XPJ61e-117A0A2H3XPJ6_PHODC; transcription factor bHLH106-like
STRINGXP_008786854.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-41bHLH family protein