PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922292.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 314aa    MW: 34921.9 Da    PI: 5.8012
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922292.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33112168258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k++++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  XP_010922292.1 112 DDGYKWRKYGQKSIKNNPNPRSYYRCTNPRCNAKKQVERSTEDPEMLIITYEGLHLH 168
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.529106171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-31108169IPR003657WRKY domain
SuperFamilySSF1182903.66E-27109169IPR003657WRKY domain
SMARTSM007746.9E-38111170IPR003657WRKY domain
PfamPF031061.3E-26112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEEVDESEAS WFDGSVEELI HELFDDESPL FVPPEVPESQ EAASQKSVVN KLISSVYSGP  60
TIGDIQSALS MGFQHGRSTG SLAVSSFPEK GSGKMENKYT LRIKSCGNGL TDDGYKWRKY  120
GQKSIKNNPN PRSYYRCTNP RCNAKKQVER STEDPEMLII TYEGLHLHYA YSHFFLPRRQ  180
GQNSATSLHV PKKPKVQQAE DLDQNPDARS TKPEAPTTTQ QQQQQELVII GEKSPQGTLL  240
GPVLREERMP TEDNAQCPQG LLEDIVPLLV RKPCNSTSSQ ASSPDHYSPS HSWSLNSAHL  300
DVGILSNMIP VTHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-221101681674Probable WRKY transcription factor 4
2lex_A4e-221101681674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922292.10.0probable WRKY transcription factor 49
TrEMBLA0A2H3XLJ01e-174A0A2H3XLJ0_PHODC; probable WRKY transcription factor 49
STRINGXP_008785604.11e-175(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-49WRKY DNA-binding protein 49