PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922362.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WOX
Protein Properties Length: 252aa    MW: 28344 Da    PI: 8.3149
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922362.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-201877357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tkeq+ +Le l+++  r+psae++++++ kl    +++ ++V++WFqN++a++++
  XP_010922362.1 18 SRWNPTKEQIAILEGLYRQgIRTPSAEQIQQITGKLreygSIEGKNVFYWFQNHKARQRQ 77
                    7*****************99**************************************97 PP
2Wus_type_Homeobox116.21.5e-371779365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +RW+Pt+eQi iLe ly++G+rtP++e+iq+it +L+eyG ie+kNVfyWFQN+kaR+rqkq
     XP_010922362.1 17 GSRWNPTKEQIAILEGLYRQGIRTPSAEQIQQITGKLREYGSIEGKNVFYWFQNHKARQRQKQ 79
                       68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.0E-61582IPR001356Homeobox domain
SuperFamilySSF466891.15E-121585IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-81683IPR009057Homeodomain-like
PfamPF000462.7E-181877IPR001356Homeobox domain
CDDcd000866.70E-61979No hitNo description
PROSITE profilePS5007110.3982378IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEECKGSASA SSPLPSGSRW NPTKEQIAIL EGLYRQGIRT PSAEQIQQIT GKLREYGSIE  60
GKNVFYWFQN HKARQRQKQK QECFAYYSRL FHQAPPTPLL SPPPPPTCTN VVRRPYYFQV  120
PQVGGVGFYG PQFPNMFLPG ALHINPRPEH QVSRERIPEP YSNAPHPAYY YDHHATGMGH  180
STADLATMND PISHETLQLF PLHPTGILEE RSGSTLISAS AKSEILDDIV KDEVGGENQP  240
PFNFFRAPKK PC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922362.10.0WUSCHEL-related homeobox 5-like
TrEMBLA0A2H3ZWL41e-135A0A2H3ZWL4_PHODC; WUSCHEL-related homeobox 5-like
STRINGXP_008802781.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-40WUSCHEL related homeobox 2