PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922394.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 158aa    MW: 18131.7 Da    PI: 10.5338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922394.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-0590112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg++Fs    L  H+r+H
  XP_010922394.1  90 HQCSVCGQRFSMGQALGGHMRRH 112
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576127No hitNo description
SuperFamilySSF576671.51E-744112No hitNo description
PfamPF139121.6E-124468IPR007087Zinc finger, C2H2
SMARTSM003550.324567IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5364572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139127.9E-1189114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-490113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.32590117IPR007087Zinc finger, C2H2
SMARTSM003550.02690112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKHLRAEEER ETDTMKTANH LWLSLSCRGK PEKIRRRTKT EDGVFECKTC SRRFPSFQAL  60
GGHRTSHRLP RFPDVGLHLT QGSRPKTSVH QCSVCGQRFS MGQALGGHMR RHNKPSRDQT  120
FPEKKTGVEK SMLDLNVIPL EDDRPRESSH GVLLELFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788150.11e-71zinc finger protein ZAT11-like
SwissprotQ9SLD41e-21ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2H3XSQ12e-70A0A2H3XSQ1_PHODC; zinc finger protein ZAT11-like
STRINGXP_008788150.14e-71(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.16e-25C2H2 family protein