PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922397.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 187aa    MW: 21560.9 Da    PI: 4.7258
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922397.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-16243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_010922397.1  2 TPQEERLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                     9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.14E-11143No hitNo description
PROSITE profilePS5129424.852147IPR017930Myb domain
SMARTSM007171.6E-11145IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-13249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-20244IPR009057Homeodomain-like
PfamPF002499.4E-15242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTPQEERLIL ELHSRWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQER KKNALSSSSS  60
SSSLTDNSAS VSEPPSDAGL EQHELNGGSG CCCMAAGFVE NEEGVKGYSM DQIWNEIIAT  120
PEAVSELSFG EWKNDFFDTS WPPMPSPMWE YSSESPWKMD YEEFKMLPSL DDLLLFSNYQ  180
HGREFYN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922397.11e-138myb-related protein MYBAS2 isoform X2
SwissprotQ4JL767e-42MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A2H3XSU63e-87A0A2H3XSU6_PHODC; myb-related protein MYBAS2 isoform X1
TrEMBLA0A3Q0I2V13e-88A0A3Q0I2V1_PHODC; myb-related protein MYBAS2 isoform X2
STRINGXP_008788078.15e-88(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.11e-37myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]