PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922413.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 225aa MW: 25716.5 Da PI: 9.9904

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922413.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49	1.1e-15	129	219	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp++f+++h +++++++tl de+g +++ + k++ l++GW++F ++L +gD ++F+l++ ++f +v XP_010922413.1 129 FVKPMLQSHVTGGFWLGLPRHFCTKHL--PRKDTMMTLVDENGDEFKSLYLAPKNG----LSGGWRGFSIYHELVDGDALIFQLIKPTTF--KVY 215 89**********************5..457789***********555555....9*********************986666..999 PP EE-S CS B3 96 vfrk 99 ++r+ XP_010922413.1 216 IIRA 219 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-20	120	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.14E-24	122	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.71E-25	127	218	No hit	No description
PROSITE profile	PS50863	11.406	129	220	IPR003340	B3 DNA binding domain
SMART	SM01019	4.4E-19	129	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-14	129	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGAGKALSYE EMRQKKLEEN KRKLEELNLS HLSLVLREAT SPKTTPTKQT KRKVPQEGGL 60 VAVRRSDRLA NLPQQPTYRE VASDIVERPR SFKRRCLADR VYASDEARLY AQTKAEELES 120 QLDPKFPTFV KPMLQSHVTG GFWLGLPRHF CTKHLPRKDT MMTLVDENGD EFKSLYLAPK 180 NGLSGGWRGF SIYHELVDGD ALIFQLIKPT TFKVYIIRAS GYDQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922413.1	1e-168	B3 domain-containing protein Os06g0194400 isoform X2
Swissprot	Q69V36	2e-86	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2H3XSH4	1e-151	A0A2H3XSH4_PHODC; B3 domain-containing protein Os06g0194400
STRING	XP_008788064.1	1e-152	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-60	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]