PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922496.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 482aa    MW: 52358.7 Da    PI: 6.5114
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922496.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17167216155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010922496.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                     78*******************......55************************997 PP
2AP2431.1e-13259309155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k++g
  XP_010922496.1 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKFNG 309
                     89********.7******5553..2.26**********99***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15167224IPR016177DNA-binding domain
PfamPF008475.5E-9167216IPR001471AP2/ERF domain
SMARTSM003801.5E-31168230IPR001471AP2/ERF domain
PROSITE profilePS5103217.794168224IPR001471AP2/ERF domain
CDDcd000183.26E-11168225No hitNo description
Gene3DG3DSA:3.30.730.106.6E-17168224IPR001471AP2/ERF domain
CDDcd000183.29E-25259319No hitNo description
SuperFamilySSF541717.19E-17259318IPR016177DNA-binding domain
PfamPF008475.4E-9259309IPR001471AP2/ERF domain
SMARTSM003805.7E-32260323IPR001471AP2/ERF domain
PROSITE profilePS5103216.291260317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-16260317IPR001471AP2/ERF domain
PRINTSPR003671.7E-6261272IPR001471AP2/ERF domain
PRINTSPR003671.7E-6299319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVLDLNVASP GESSSCGEEK VVMEGSGGAP MEESGTSNSS VLNAEASSNA GDDDSCSAAA  60
AVGGFNFGIL KSSLRAHGEE EVEEELEEED GASGEAGFVT RQLFPPFSVV QEGVQPPTVA  120
SSSTPALPRR MELRFLQSNT AGSVEAKVLQ QQHQVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNICDYEE DLKQMRNLTK  240
EEFVHILRRQ STGFARGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY  300
DKAAIKFNGR EAVTNFEPST YEGEVHPEPN NEVAGDNVDL DLRISQPNVH SPKKDNNSMD  360
IQPNHSSFAA SGAGNSRANN STSHLAHPQH LPMAPEHPHA WTALYPGFFT HTEERATKGS  420
EVGFPAPSNR AWPTQGPTSP FSSAASSGFS TAATVVAAHH LPPSAAHLNF PPSATVNHYH  480
MS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922496.10.0APETALA2-like protein 2
SwissprotQ8H4431e-123AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2H3ZLG90.0A0A2H3ZLG9_PHODC; LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor TOE3
STRINGXP_008802331.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-103related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]