PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922519.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 199aa MW: 22000 Da PI: 5.6269

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922519.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	5.2e-42	40	138	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C++apyfp ++p kfa h++FGasn++kll++lpe++r da+ss++yeA+ar+rdPvyG++g+i +lq+q+++l+a+la XP_010922519.1 40 PCAACKILRRRCSEKCMFAPYFPPNEPLKFATSHRVFGASNIIKLLQELPESQRADAVSSMAYEANARIRDPVYGCAGIICQLQKQVSELQAQLA 134 7*********************************************************************************************9 PP DUF260 96 llke 99 + ++ XP_010922519.1 135 REQA 138 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.134	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-42	40	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MEASEATTTT TTFHCPPSSS PSSSPASSPH VASPPVVLSP CAACKILRRR CSEKCMFAPY 60 FPPNEPLKFA TSHRVFGASN IIKLLQELPE SQRADAVSSM AYEANARIRD PVYGCAGIIC 120 QLQKQVSELQ AQLAREQADL LTMKTQHANL VAVIYMEMAQ SPQLVRDNFN TNNLNLLQTD 180 AFMQDDYCQG SIWEEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	35	141	6	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	35	141	6	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922519.1	1e-148	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-66	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2H3XHB0	2e-99	A0A2H3XHB0_PHODC; LOB domain-containing protein 1-like
STRING	XP_008783779.1	1e-100	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-61	LOB domain-containing protein 1