PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922545.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 263aa    MW: 29079.5 Da    PI: 8.7025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922545.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-076789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ Cgk F+r  nL+ H r H
  XP_010922545.1 67 FVCEVCGKEFRRDQNLQIHRRGH 89
                    89*******************88 PP
2zf-C2H211.40.00099156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  + + k H r +
  XP_010922545.1 156 WKCDKCSKKYAVRTDWKAHTRIC 178
                     58******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-106689No hitNo description
SMARTSM003550.00496789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6976789IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-76789IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035579121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.24E-10151177No hitNo description
SMARTSM00355120156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MTGDEIRDPI ANPNPNSNPD SNPESNRQAV ERTAAGVKRK RNLPGTPDPE AEVIALSPEA  60
LLSSSTFVCE VCGKEFRRDQ NLQIHRRGHN LPWNFPQKKA AAAVAAAAEG GGKEAARKRV  120
YVCPEETCVY HDPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVRTD WKAHTRICGN  180
REYECLCGTL FSRKDSFVVH RASCEATAES PAAATVDLSF RANTVNNELL FPSLWGQSSS  240
QSTGAREEQR QVEQGHDLSS TNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-26152212363Zinc finger protein JACKDAW
5b3h_F1e-26152212363Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922545.10.0zinc finger protein BALDIBIS
SwissprotQ944L37e-89IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A2H3YYH31e-160A0A2H3YYH3_PHODC; protein indeterminate-domain 9-like
STRINGXP_008805552.11e-161(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-77C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]