PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922579.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 240aa    MW: 25549.6 Da    PI: 9.5778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922579.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-181459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W +eEd +l ++v+ +G+++W++I++ ++ gRt+k+c++rw + 
   XP_010922579.1 14 KGSWRPEEDAKLRELVEIYGPRNWSLISAGIP-GRTGKSCRLRWCNQ 59
                     799*****************************.***********985 PP
2Myb_DNA-binding53.46.1e-1768110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed ++v a++++G++ W++Iar ++ gRt++ +k++w++ 
   XP_010922579.1  68 PFTAAEDAIIVAAHARYGNR-WAAIARLLP-GRTDNAVKNHWNST 110
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.707964IPR017930Myb domain
SuperFamilySSF466896.25E-3011107IPR009057Homeodomain-like
SMARTSM007176.9E-161362IPR001005SANT/Myb domain
PfamPF002491.6E-171459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251567IPR009057Homeodomain-like
CDDcd001671.02E-141658No hitNo description
PROSITE profilePS5129420.66565115IPR017930Myb domain
SMARTSM007173.6E-1565113IPR001005SANT/Myb domain
PfamPF002493.9E-1468110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2268114IPR009057Homeodomain-like
CDDcd001677.32E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEGVGVGEEY SRVKGSWRPE EDAKLRELVE IYGPRNWSLI SAGIPGRTGK SCRLRWCNQL  60
SPDIHHRPFT AAEDAIIVAA HARYGNRWAA IARLLPGRTD NAVKNHWNST LRRRRLRGEK  120
PFSPADAAAA DASGSGGGAG SSVVDESDSE SVRKRQCRRE GKGCLAVAAA AAAPGPATAL  180
SLRPPGEGGE ERRSEVEASV VAVMRRMIAE EVRSYVHGLQ SDGGGGAVSL SVKSESASSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-39131143104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-381311457158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-381311457158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-39131143104C-Myb DNA-Binding Domain
1msf_C5e-39131143104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922579.11e-171transcription factor MYB44-like
TrEMBLA0A2H3YXG81e-132A0A2H3YXG8_PHODC; transcription factor MYB73-like
STRINGXP_008805112.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-46myb domain protein 77