PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922593.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 359aa MW: 40872.2 Da PI: 6.6821

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922593.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.2e-32	59	112	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+a+e LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ XP_010922593.1 59 PRLRWTPELHLCFVHAIETLGGQDRATPKMVLQLMNVKGLSIAHVKSHLQMYRS 112 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.285	55	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-30	55	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-15	56	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	58	114	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-8	60	111	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGSMSSESSR KSLSKVDEVE EDGVNNLRHG GSSSNSTVEE SGRKASSGTV RQYVRSKNPR 60 LRWTPELHLC FVHAIETLGG QDRATPKMVL QLMNVKGLSI AHVKSHLQMY RSKKIDDSGQ 120 VIADPRSVMQ GREQHINNLS HLPMLHSFHQ WPISNSRFDD YFWASPRNWM HNQVLGRAMN 180 STGEPRSYGS ITEMVFRGGD RLKSNQDFHT KDSSLDHRAS RELCEASGLH DYRLAATQYR 240 PQERETCFIT QFQETNPQGQ SSMRWKADDH GPDLNLSLNI GPRREKKQRW EEEEEGGGGE 300 EEEEEEEEVD SSLSLSLFSP SRIERCSRDA EKASKHNRWE EEVGKGKNAR VTSTLDLTI

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGSMSSESSR KSLSKVDEVE EDGVNNLRHG GSSSNSTVEE SGRKASSGTV RQYVRSKNPR  60
LRWTPELHLC FVHAIETLGG QDRATPKMVL QLMNVKGLSI AHVKSHLQMY RSKKIDDSGQ  120
VIADPRSVMQ GREQHINNLS HLPMLHSFHQ WPISNSRFDD YFWASPRNWM HNQVLGRAMN  180
STGEPRSYGS ITEMVFRGGD RLKSNQDFHT KDSSLDHRAS RELCEASGLH DYRLAATQYR  240
PQERETCFIT QFQETNPQGQ SSMRWKADDH GPDLNLSLNI GPRREKKQRW EEEEEGGGGE  300
EEEEEEEEVD SSLSLSLFSP SRIERCSRDA EKASKHNRWE EEVGKGKNAR VTSTLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922593.1	0.0	uncharacterized protein LOC105045864
TrEMBL	A0A3Q0HQN8	1e-156	A0A3Q0HQN8_PHODC; transcription repressor KAN1-like isoform X1
STRING	GSMUA_Achr7P22410_001	6e-93	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-43	G2-like family protein