PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922620.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 159aa MW: 17658.4 Da PI: 8.1416

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922620.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.5	3.2e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+Cak+C++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vgvi+ lq+q+++l+ +la XP_010922620.1 6 PCASCKLLRRRCAKNCIFAPYFPSDDPHKFAMVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGVISFLQNQVSHLQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010922620.1 101 MAQAE 105 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.814	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MAAGSPCASC KLLRRRCAKN CIFAPYFPSD DPHKFAMVHK VFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA NARMRDPVYG CVGVISFLQN QVSHLQMQLA MAQAEVLCIQ MQQESSMANQ 120 QMHTDDKSFL LHNSINTMPQ FMNFASGSVV QGPFKIESL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922620.1	1e-116	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2H3YK29	1e-101	A0A2H3YK29_PHODC; LOB domain-containing protein 12-like
STRING	XP_008799794.1	1e-102	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-73	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]