PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922641.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 272aa    MW: 29904.1 Da    PI: 4.3492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922641.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-191262155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  XP_010922641.1 12 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFNTALDAAMAYDEAARAMYG 62
                    56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-301270No hitNo description
PfamPF008477.0E-131262IPR001471AP2/ERF domain
PROSITE profilePS5103221.0221370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-311371IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-201370IPR016177DNA-binding domain
SMARTSM003801.6E-341376IPR001471AP2/ERF domain
PRINTSPR003679.7E-101425IPR001471AP2/ERF domain
PRINTSPR003679.7E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRGKGGPENS HCNYRGVRQR TWGKWVAEIR EPNRGSRLWL GTFNTALDAA MAYDEAARAM  60
YGPCARLNLP QCDIAAKDTT LGDAESYEST TTTSQLSNAS GLEESGIKAP KLEAGDKRRS  120
INPPQSTAEP VMSMVKTEAD EELFKHFDSL QDLHQDIVGI EDILGNMDLY PSSSTTITQN  180
MKSEKDQVGG VDTNTIGLNG TPSALSFRTQ SPDVKSPGTW CTMGQTPADM DDDNCDFIKQ  240
MSQDMEFGFT NDQGIPELEF PDPRLFPESH GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-181370260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922640.10.0dehydration-responsive element-binding protein 2B isoform X1
RefseqXP_010922641.10.0dehydration-responsive element-binding protein 2C isoform X2
TrEMBLA0A2H3YK391e-154A0A2H3YK39_PHODC; dehydration-responsive element-binding protein 2C-like isoform X1
TrEMBLA0A2H3ZUD61e-155A0A2H3ZUD6_PHODC; dehydration-responsive element-binding protein 2C-like isoform X2
STRINGXP_008799804.11e-155(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-27ERF family protein